modeltype = speciationextinction
treefile = salamandridae.tre
runInfoFilename = run_info.txt
sampleFromPriorOnly = 0
runMCMC = 1
loadEventData = 0
eventDataInfile = event_data_in.txt
initializeModel = 1
useGlobalSamplingProbability = 1
globalSamplingFraction = 0.64
sampleProbsFilename = sampling.txt
overwrite = 1
expectedNumberOfShifts = 1
lambdaInitPrior = 3.9204433274581
lambdaShiftPrior = 0
muInitPrior = 3.9204433274581
lambdaIsTimeVariablePrior = 0
numberOfGenerations = 10000000
mcmcOutfile = mcmc_out.txt
mcmcWriteFreq = 10000
eventDataOutfile = event_data.txt
eventDataWriteFreq = 10000
printFreq = 5000
acceptanceResetFreq = 1000
updateLambdaInitScale = 2.0
updateLambdaShiftScale = 0.1
updateMuInitScale = 2.0
updateEventLocationScale = 0.1
updateEventRateScale = 4.0
updateRateEventNumber = 0.75
updateRateEventPosition = 0.25
updateRateEventRate = 1
updateRateLambda0 = 1
updateRateLambdaShift = 0
updateRateMu0 = 1
updateRateLambdaTimeMode = 0
localGlobalMoveRatio = 10.0
lambdaInit0 = 0.01
lambdaShift0 = 0
muInit0 = 0.009
initialNumberEvents = 0
numberOfChains = 1
deltaT = 0.5
swapPeriod = 1000
chainSwapFileName = chain_swap.txt
minCladeSizeForShift = 1
segLength = 100
extinctionProbMax = 0.999999999
updateRatePreservationRate = 1
observationTime = 75.261776
updatePreservationRateScale = 1.0
preservationRatePrior = 1.0
preservationRateInit = 0.021928030285899
numberOccurrences = 32
checkUltrametric = 0
preservationModel = one_rate
combineExtinctionAtNodes = recompute
conditionOnSurvival = 0